surface_genetic_expression

Synopsis

Downloads and reads genetic expression profiles (source code).

Usage

profiles = surface_genetic_expression(atlas, n_regions, varargin);

  • profiles: Histological profiles.

  • atlas: Name of a surface parcellation. Valid names are: ‘schaefer’, ‘cammoun’, ‘glasser’.

  • n_regions: Number of regions in the parcellation, see function help for details on the number of regions available for each atlas.

  • varargin: Name-value pairs, see below.

Name-value pairs

‘data_dir’

  • Directory where the data is stored. Defaults to $HOME_DIR/brainstat_data/genetic_data.

‘seven_networks’

  • Only used for the Schaefer atlas. If true, uses the 7 network Yeo sub-parcellation, otherwise uses the 17 network Yeo sub-parcellation, defaults to true.

‘overwrite’

  • If true, overwrites existing files, defaults to false.

‘verbose’

  • If true, provides verbose output, defaults to true.