Index

_

__init__() (brainstat.stats.SLM.SLM method) (brainstat.stats.terms.FixedEffect method) (brainstat.stats.terms.MixedEffect method)

A

apply_mask() (in module brainstat.stats.utils)

array2effect() (in module brainstat.tests.testutil) as_variance() (in module brainstat.tests.test_terms)

B

brainstat module, [1] brainstat.context module brainstat.context.genetics module brainstat.context.histology module brainstat.context.meta_analysis module brainstat.context.resting module brainstat.datasets module brainstat.datasets.base module brainstat.mesh module brainstat.mesh.data module brainstat.mesh.interpolate module brainstat.mesh.utils module brainstat.stats module brainstat.stats.SLM module brainstat.stats.terms module

brainstat.stats.utils module brainstat.tests module brainstat.tests.datagen_f module brainstat.tests.datagen_linear_model module brainstat.tests.datagen_mesh_edges module brainstat.tests.datagen_peak_clus module brainstat.tests.datagen_stat_threshold module brainstat.tests.datagen_t_test module brainstat.tests.test_f_test module brainstat.tests.test_mesh_smooth module brainstat.tests.test_stat_threshold module brainstat.tests.test_terms module brainstat.tests.testutil module brainstat.tutorial module brainstat.tutorial.utils module

C

check_categorical_variables() (in module brainstat.stats.terms) check_duplicate_names() (in module brainstat.stats.terms) check_names() (in module brainstat.stats.terms) colon() (in module brainstat.stats.utils)

combine_parcellations() (in module brainstat.mesh.interpolate) compute_histology_gradients() (in module brainstat.context.histology) compute_mpc() (in module brainstat.context.histology) copy_slm() (in module brainstat.tests.testutil) cortical_ribbon() (in module brainstat.mesh.interpolate)

D

datadir() (in module brainstat.tests.testutil) download_histology_profiles() (in module brainstat.context.histology)

dummy_test() (in module brainstat.tests.test_f_test) (in module brainstat.tests.test_mesh_smooth) (in module brainstat.tests.test_stat_threshold)

F

f_test() (in module brainstat.stats.SLM) fetch_abide_data() (in module brainstat.tutorial.utils) fetch_gradients() (in module brainstat.datasets.base) fetch_mask() (in module brainstat.datasets.base) fetch_mics_data() (in module brainstat.tutorial.utils)

fetch_parcellation() (in module brainstat.datasets.base) fetch_template_surface() (in module brainstat.datasets.base) fetch_yeo_networks_metadata() (in module brainstat.datasets.base) fit() (brainstat.stats.SLM.SLM method) FixedEffect (class in brainstat.stats.terms)

G

generate_data_test_mesh_edges() (in module brainstat.tests.datagen_mesh_edges) generate_f_test_out() (in module brainstat.tests.datagen_f) generate_peak_clus_out() (in module brainstat.tests.datagen_peak_clus) generate_random_data_model() (in module brainstat.tests.testutil) generate_random_mesh_edge_data() (in module brainstat.tests.datagen_mesh_edges) generate_random_slm() (in module brainstat.tests.datagen_peak_clus) generate_random_two_slms() (in module brainstat.tests.datagen_f) generate_slm() (in module brainstat.tests.testutil)

generate_stat_threshold_out() (in module brainstat.tests.datagen_stat_threshold) generate_test_data() (in module brainstat.tests.datagen_f) (in module brainstat.tests.datagen_linear_model) (in module brainstat.tests.datagen_peak_clus) (in module brainstat.tests.datagen_stat_threshold) (in module brainstat.tests.datagen_t_test) get_index() (in module brainstat.stats.terms) get_meshedge_output() (in module brainstat.tests.datagen_mesh_edges) gradients_corr() (in module brainstat.context.resting)

I

interp1() (in module brainstat.stats.utils)

ismember() (in module brainstat.stats.utils)

L

lattice_to_edges() (in module brainstat.mesh.utils)

load_mesh_labels() (in module brainstat.mesh.interpolate)

M

mesh_edges() (in module brainstat.mesh.utils) mesh_smooth() (in module brainstat.mesh.data) meta_analytic_decoder() (in module brainstat.context.meta_analysis) MixedEffect (class in brainstat.stats.terms) module brainstat, [1] brainstat.context brainstat.context.genetics brainstat.context.histology brainstat.context.meta_analysis brainstat.context.resting brainstat.datasets brainstat.datasets.base brainstat.mesh brainstat.mesh.data brainstat.mesh.interpolate brainstat.mesh.utils brainstat.stats brainstat.stats.SLM brainstat.stats.terms brainstat.stats.utils brainstat.tests brainstat.tests.datagen_f brainstat.tests.datagen_linear_model brainstat.tests.datagen_mesh_edges brainstat.tests.datagen_peak_clus brainstat.tests.datagen_stat_threshold brainstat.tests.datagen_t_test brainstat.tests.test_f_test brainstat.tests.test_mesh_smooth brainstat.tests.test_stat_threshold brainstat.tests.test_terms brainstat.tests.testutil brainstat.tutorial brainstat.tutorial.utils

multi_surface_to_volume() (in module brainstat.mesh.interpolate) multiple_comparison_corrections() (brainstat.stats.SLM.SLM method)

P

params2files() (in module brainstat.tests.datagen_f) (in module brainstat.tests.datagen_peak_clus) (in module brainstat.tests.datagen_stat_threshold)

partial_correlation() (in module brainstat.context.histology)

Q

qc() (brainstat.stats.SLM.SLM method)

R

radar_plot() (in module brainstat.context.meta_analysis) read_histology_profile() (in module brainstat.context.histology) read_surface_gz() (in module brainstat.mesh.interpolate)

remove_duplicate_columns() (in module brainstat.stats.terms) remove_identical_columns() (in module brainstat.stats.terms) ribbon_interpolation() (in module brainstat.mesh.interpolate) row_ismember() (in module brainstat.stats.utils)

S

save_input_dict() (in module brainstat.tests.testutil) save_slm() (in module brainstat.tests.testutil) set_identity_last() (brainstat.stats.terms.MixedEffect method) SLM (class in brainstat.stats.SLM)

slm2dict() (in module brainstat.tests.testutil) slm2files() (in module brainstat.tests.testutil) surface_genetic_expression() (in module brainstat.context.genetics) surface_to_volume() (in module brainstat.mesh.interpolate)

T

test_01() (in module brainstat.tests.test_f_test) (in module brainstat.tests.test_mesh_smooth) (in module brainstat.tests.test_stat_threshold) test_02() (in module brainstat.tests.test_f_test) (in module brainstat.tests.test_stat_threshold) test_03() (in module brainstat.tests.test_f_test) (in module brainstat.tests.test_stat_threshold) test_04() (in module brainstat.tests.test_f_test) (in module brainstat.tests.test_stat_threshold) test_05() (in module brainstat.tests.test_f_test) (in module brainstat.tests.test_stat_threshold) test_06() (in module brainstat.tests.test_f_test) (in module brainstat.tests.test_stat_threshold) test_07() (in module brainstat.tests.test_f_test) (in module brainstat.tests.test_stat_threshold) test_08() (in module brainstat.tests.test_f_test) (in module brainstat.tests.test_stat_threshold) test_09() (in module brainstat.tests.test_f_test) (in module brainstat.tests.test_stat_threshold) test_10() (in module brainstat.tests.test_f_test) (in module brainstat.tests.test_stat_threshold) test_11() (in module brainstat.tests.test_f_test) (in module brainstat.tests.test_stat_threshold) test_12() (in module brainstat.tests.test_f_test) (in module brainstat.tests.test_stat_threshold) test_13() (in module brainstat.tests.test_f_test) (in module brainstat.tests.test_stat_threshold) test_14() (in module brainstat.tests.test_f_test) (in module brainstat.tests.test_stat_threshold) test_15() (in module brainstat.tests.test_f_test) (in module brainstat.tests.test_stat_threshold) test_16() (in module brainstat.tests.test_f_test) (in module brainstat.tests.test_stat_threshold) test_17() (in module brainstat.tests.test_stat_threshold) test_18() (in module brainstat.tests.test_stat_threshold) test_19() (in module brainstat.tests.test_stat_threshold)

test_20() (in module brainstat.tests.test_stat_threshold) test_21() (in module brainstat.tests.test_stat_threshold) test_22() (in module brainstat.tests.test_stat_threshold) test_23() (in module brainstat.tests.test_stat_threshold) test_24() (in module brainstat.tests.test_stat_threshold) test_25() (in module brainstat.tests.test_stat_threshold) test_26() (in module brainstat.tests.test_stat_threshold) test_27() (in module brainstat.tests.test_stat_threshold) test_28() (in module brainstat.tests.test_stat_threshold) test_29() (in module brainstat.tests.test_stat_threshold) test_30() (in module brainstat.tests.test_stat_threshold) test_31() (in module brainstat.tests.test_stat_threshold) test_32() (in module brainstat.tests.test_stat_threshold) test_33() (in module brainstat.tests.test_stat_threshold) test_34() (in module brainstat.tests.test_stat_threshold) test_35() (in module brainstat.tests.test_stat_threshold) test_36() (in module brainstat.tests.test_stat_threshold) test_37() (in module brainstat.tests.test_stat_threshold) test_38() (in module brainstat.tests.test_stat_threshold) test_39() (in module brainstat.tests.test_stat_threshold) test_40() (in module brainstat.tests.test_stat_threshold) test_41() (in module brainstat.tests.test_stat_threshold) test_42() (in module brainstat.tests.test_stat_threshold) test_43() (in module brainstat.tests.test_stat_threshold) test_44() (in module brainstat.tests.test_stat_threshold) test_45() (in module brainstat.tests.test_stat_threshold) test_46() (in module brainstat.tests.test_stat_threshold) test_47() (in module brainstat.tests.test_stat_threshold) test_48() (in module brainstat.tests.test_stat_threshold) test_fixed_init() (in module brainstat.tests.test_terms) test_fixed_overload() (in module brainstat.tests.test_terms) test_identity_detection() (in module brainstat.tests.test_terms) test_mixed_init() (in module brainstat.tests.test_terms) test_mixed_overload() (in module brainstat.tests.test_terms) to_df() (in module brainstat.stats.terms) triangles_to_edges() (in module brainstat.mesh.utils)

U

undo_mask() (in module brainstat.stats.utils)

Y

yeo_networks_associations() (in module brainstat.context.resting)